KZX12581.1 protein (Methanobrevibacter filiformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KZX12581.1

Hypothetical protein; Plays a role in the regulation of phosphate uptake. (241 aa)

Predicted Functional Partners:

pstB3_2

0.910

pstA_2

0.894

pstB3_1

0.842

pstA_1

0.818

pstC_2

0.668

pstS1_2

0.556

pstC_1

0.525

pstS1_1

0.520

Your Current Organism:

Methanobrevibacter filiformis

NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KZX12581.1	pstA_1	MBFIL_11210	MBFIL_00880	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate transport system permease protein PstA.	0.818
KZX12581.1	pstA_2	MBFIL_11210	MBFIL_11190	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate transport system permease protein PstA.	0.894
KZX12581.1	pstB3_1	MBFIL_11210	MBFIL_00890	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.842
KZX12581.1	pstB3_2	MBFIL_11210	MBFIL_11200	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.910
KZX12581.1	pstC_1	MBFIL_11210	MBFIL_00870	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate transport system permease protein PstC.	0.525
KZX12581.1	pstC_2	MBFIL_11210	MBFIL_11180	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate transport system permease protein PstC.	0.668
KZX12581.1	pstS1_1	MBFIL_11210	MBFIL_00860	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate-binding protein PstS 1 precursor.	0.520
KZX12581.1	pstS1_2	MBFIL_11210	MBFIL_11170	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate-binding protein PstS 1 precursor.	0.556
pstA_1	KZX12581.1	MBFIL_00880	MBFIL_11210	Phosphate transport system permease protein PstA.	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	0.818
pstA_1	pstB3_1	MBFIL_00880	MBFIL_00890	Phosphate transport system permease protein PstA.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.999
pstA_1	pstB3_2	MBFIL_00880	MBFIL_11200	Phosphate transport system permease protein PstA.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.983
pstA_1	pstC_1	MBFIL_00880	MBFIL_00870	Phosphate transport system permease protein PstA.	Phosphate transport system permease protein PstC.	0.997
pstA_1	pstC_2	MBFIL_00880	MBFIL_11180	Phosphate transport system permease protein PstA.	Phosphate transport system permease protein PstC.	0.939
pstA_1	pstS1_1	MBFIL_00880	MBFIL_00860	Phosphate transport system permease protein PstA.	Phosphate-binding protein PstS 1 precursor.	0.981
pstA_1	pstS1_2	MBFIL_00880	MBFIL_11170	Phosphate transport system permease protein PstA.	Phosphate-binding protein PstS 1 precursor.	0.968
pstA_2	KZX12581.1	MBFIL_11190	MBFIL_11210	Phosphate transport system permease protein PstA.	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	0.894
pstA_2	pstB3_1	MBFIL_11190	MBFIL_00890	Phosphate transport system permease protein PstA.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.983
pstA_2	pstB3_2	MBFIL_11190	MBFIL_11200	Phosphate transport system permease protein PstA.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.999
pstA_2	pstC_1	MBFIL_11190	MBFIL_00870	Phosphate transport system permease protein PstA.	Phosphate transport system permease protein PstC.	0.939
pstA_2	pstC_2	MBFIL_11190	MBFIL_11180	Phosphate transport system permease protein PstA.	Phosphate transport system permease protein PstC.	0.997