KZX11767.1 protein (Methanobrevibacter filiformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KZX11767.1

TfuA-like protein. (209 aa)

Predicted Functional Partners:

KZX11766.1

0.980

KZX11765.1

0.760

queC_1

0.727

KZX11639.1

0.527

copA_1

0.517

KZX14915.1

0.427

KZX10088.1

0.410

KZX11644.1

0.405

mtrC

0.404

Your Current Organism:

Methanobrevibacter filiformis

NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KZX10088.1	KZX11639.1	MBFIL_18990	MBFIL_13620	Hypothetical protein.	Radical SAM superfamily protein.	0.440
KZX10088.1	KZX11644.1	MBFIL_18990	MBFIL_13670	Hypothetical protein.	Hypothetical protein; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	0.752
KZX10088.1	KZX11766.1	MBFIL_18990	MBFIL_13280	Hypothetical protein.	YcaO-like family protein.	0.649
KZX10088.1	KZX11767.1	MBFIL_18990	MBFIL_13290	Hypothetical protein.	TfuA-like protein.	0.410
KZX10088.1	copA_1	MBFIL_18990	MBFIL_11390	Hypothetical protein.	Putative copper-importing P-type ATPase A.	0.641
KZX10088.1	mtrC	MBFIL_18990	MBFIL_13700	Hypothetical protein.	Tetrahydromethanopterin S-methyltransferase subunit C; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.	0.449
KZX11639.1	KZX10088.1	MBFIL_13620	MBFIL_18990	Radical SAM superfamily protein.	Hypothetical protein.	0.440
KZX11639.1	KZX11644.1	MBFIL_13620	MBFIL_13670	Radical SAM superfamily protein.	Hypothetical protein; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	0.957
KZX11639.1	KZX11766.1	MBFIL_13620	MBFIL_13280	Radical SAM superfamily protein.	YcaO-like family protein.	0.465
KZX11639.1	KZX11767.1	MBFIL_13620	MBFIL_13290	Radical SAM superfamily protein.	TfuA-like protein.	0.527
KZX11639.1	KZX14915.1	MBFIL_13620	MBFIL_07800	Radical SAM superfamily protein.	tRNAHis guanylyltransferase.	0.556
KZX11639.1	copA_1	MBFIL_13620	MBFIL_11390	Radical SAM superfamily protein.	Putative copper-importing P-type ATPase A.	0.620
KZX11639.1	mtrC	MBFIL_13620	MBFIL_13700	Radical SAM superfamily protein.	Tetrahydromethanopterin S-methyltransferase subunit C; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.	0.773
KZX11644.1	KZX10088.1	MBFIL_13670	MBFIL_18990	Hypothetical protein; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	Hypothetical protein.	0.752
KZX11644.1	KZX11639.1	MBFIL_13670	MBFIL_13620	Hypothetical protein; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	Radical SAM superfamily protein.	0.957
KZX11644.1	KZX11766.1	MBFIL_13670	MBFIL_13280	Hypothetical protein; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	YcaO-like family protein.	0.656
KZX11644.1	KZX11767.1	MBFIL_13670	MBFIL_13290	Hypothetical protein; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	TfuA-like protein.	0.405
KZX11644.1	mtrC	MBFIL_13670	MBFIL_13700	Hypothetical protein; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	Tetrahydromethanopterin S-methyltransferase subunit C; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.	0.978
KZX11765.1	KZX11766.1	MBFIL_13270	MBFIL_13280	Peptidase family M50.	YcaO-like family protein.	0.937
KZX11765.1	KZX11767.1	MBFIL_13270	MBFIL_13290	Peptidase family M50.	TfuA-like protein.	0.760