Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KZX11511.1Tetratricopeptide repeat protein. (323 aa)    
Predicted Functional Partners:
KZX16290.1
Lipoprotein NlpI.
  
     0.680
yrrB
TPR repeat-containing protein YrrB.
 
     0.673
KZX11260.1
Tetratricopeptide repeat protein.
 
     0.669
KZX10001.1
Tetratricopeptide repeat protein.
 
     0.649
KZX17696.1
Anaphase-promoting complex, cyclosome, subunit 3.
  
     0.576
KZX11512.1
Lipoprotein NlpI.
 
    
0.569
KZX11513.1
Hypothetical protein.
       0.467
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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