Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fbiB_3Coenzyme F420:L-glutamate ligase. (299 aa)    
Predicted Functional Partners:
yitD
Phosphosulfolactate synthase.
 
     0.778
selA
L-seryl-tRNA(Sec) selenium transferase.
  
     0.671
rpl18a
50S ribosomal protein LX.
  
     0.622
KZX12576.1
Transcriptional regulator PhoU.
  
     0.622
KZX10640.1
DNA-binding transcriptional regulator IlvY.
  
    0.617
prmA_2
Ribosomal protein L11 methyltransferase.
  
     0.571
KZX10623.1
Oligosaccharyl transferase STT3 subunit.
  
     0.555
cobQ_3
Cobyric acid synthase.
  
    0.527
trxA
Thioredoxin.
 
     0.506
KZX11689.1
GMC oxidoreductase.
  
     0.497
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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