STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KZX11043.1B12 binding domain protein. (413 aa)    
Predicted Functional Partners:
KZX11996.1
V4R domain protein.
  
 
 0.905
KZX11041.1
Chromosome segregation protein.
 
     0.825
KZX11042.1
Hypothetical protein.
       0.773
dpnC
Type-2 restriction enzyme DpnI.
       0.744
cyoE
Protoheme IX farnesyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
  
 
 0.569
KZX11045.1
Hypothetical protein.
       0.529
KZX17106.1
UDP-glucose 4-epimerase.
 
  
 0.446
KZX10995.1
Hypothetical protein.
    
 0.437
KZX17053.1
Hypothetical protein; Belongs to the UPF0284 family.
    
  0.433
KZX14469.1
HEPN domain protein.
  
     0.427
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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