Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tagF_4CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. (1090 aa)    
Predicted Functional Partners:
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
 
 0.498
hddC
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
  
 0.492
KZX17288.1
Hypothetical protein.
  
     0.489
KZX17047.1
Hypothetical protein.
  
     0.486
recQ
ATP-dependent DNA helicase RecQ.
    
 
 0.469
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.465
epsH_5
Putative glycosyltransferase EpsH.
 
0.448
tagH
Teichoic acids export ATP-binding protein TagH.
 
 
 0.437
rmd
GDP-6-deoxy-D-mannose reductase.
 
 
 0.436
epsH_2
Putative glycosyltransferase EpsH.
 
0.435
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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