Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_00002 | LHK_00003 | LHK_00002 | LHK_00003 | Hypothetical protein. | DsrE family protein. | 0.773 |
LHK_00002 | hslU | LHK_00002 | LHK_00005 | Hypothetical protein. | HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.428 |
LHK_00002 | hslV | LHK_00002 | LHK_00004 | Hypothetical protein. | HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. | 0.572 |
LHK_00002 | nadB | LHK_00002 | LHK_00001 | Hypothetical protein. | NadB; Catalyzes the oxidation of L-aspartate to iminoaspartate. | 0.527 |
LHK_00003 | LHK_00002 | LHK_00003 | LHK_00002 | DsrE family protein. | Hypothetical protein. | 0.773 |
LHK_00003 | LHK_00085 | LHK_00003 | LHK_00085 | DsrE family protein. | Hypothetical protein. | 0.449 |
LHK_00003 | LHK_02487 | LHK_00003 | LHK_02487 | DsrE family protein. | Possible exported protein. | 0.526 |
LHK_00003 | LHK_02909 | LHK_00003 | LHK_02909 | DsrE family protein. | Phosphoglycerol transferase. | 0.562 |
LHK_00003 | LHK_03127 | LHK_00003 | LHK_03127 | DsrE family protein. | SirA family protein; Belongs to the sulfur carrier protein TusA family. | 0.835 |
LHK_00003 | cutF | LHK_00003 | LHK_02189 | DsrE family protein. | CutF; Copper homeostasis protein CutF. | 0.494 |
LHK_00003 | dmsC | LHK_00003 | LHK_02498 | DsrE family protein. | DmsC; Anaerobic dimethyl sulfoxide reductase subunit C. | 0.545 |
LHK_00003 | hslU | LHK_00003 | LHK_00005 | DsrE family protein. | HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.428 |
LHK_00003 | hslV | LHK_00003 | LHK_00004 | DsrE family protein. | HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. | 0.572 |
LHK_00003 | nadB | LHK_00003 | LHK_00001 | DsrE family protein. | NadB; Catalyzes the oxidation of L-aspartate to iminoaspartate. | 0.527 |
LHK_00085 | LHK_00003 | LHK_00085 | LHK_00003 | Hypothetical protein. | DsrE family protein. | 0.449 |
LHK_00085 | LHK_02909 | LHK_00085 | LHK_02909 | Hypothetical protein. | Phosphoglycerol transferase. | 0.742 |
LHK_02487 | LHK_00003 | LHK_02487 | LHK_00003 | Possible exported protein. | DsrE family protein. | 0.526 |
LHK_02487 | cutF | LHK_02487 | LHK_02189 | Possible exported protein. | CutF; Copper homeostasis protein CutF. | 0.459 |
LHK_02909 | LHK_00003 | LHK_02909 | LHK_00003 | Phosphoglycerol transferase. | DsrE family protein. | 0.562 |
LHK_02909 | LHK_00085 | LHK_02909 | LHK_00085 | Phosphoglycerol transferase. | Hypothetical protein. | 0.742 |
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