STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_00003DsrE family protein. (119 aa)    
Predicted Functional Partners:
LHK_03127
SirA family protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.835
LHK_00002
Hypothetical protein.
       0.773
hslV
HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.572
LHK_02909
Phosphoglycerol transferase.
  
     0.562
dmsC
DmsC; Anaerobic dimethyl sulfoxide reductase subunit C.
  
     0.545
nadB
NadB; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.527
LHK_02487
Possible exported protein.
  
     0.526
cutF
CutF; Copper homeostasis protein CutF.
  
     0.494
LHK_00085
Hypothetical protein.
  
     0.449
hslU
HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
       0.428
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
Server load: low (16%) [HD]