Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_00125 | LHK_00197 | LHK_00125 | LHK_00197 | Hypothetical protein. | Putative transmembrane protein precursor. | 0.653 |
LHK_00125 | LHK_00583 | LHK_00125 | LHK_00583 | Hypothetical protein. | Putative inner membrane protein. | 0.671 |
LHK_00125 | LHK_01858 | LHK_00125 | LHK_01858 | Hypothetical protein. | PhnO-related protein. | 0.580 |
LHK_00125 | LHK_02942 | LHK_00125 | LHK_02942 | Hypothetical protein. | Probable cytochrome c5. | 0.408 |
LHK_00153 | LHK_00197 | LHK_00153 | LHK_00197 | Putative transmembrane protein. | Putative transmembrane protein precursor. | 0.658 |
LHK_00153 | LHK_00583 | LHK_00153 | LHK_00583 | Putative transmembrane protein. | Putative inner membrane protein. | 0.412 |
LHK_00153 | LHK_02942 | LHK_00153 | LHK_02942 | Putative transmembrane protein. | Probable cytochrome c5. | 0.725 |
LHK_00197 | LHK_00125 | LHK_00197 | LHK_00125 | Putative transmembrane protein precursor. | Hypothetical protein. | 0.653 |
LHK_00197 | LHK_00153 | LHK_00197 | LHK_00153 | Putative transmembrane protein precursor. | Putative transmembrane protein. | 0.658 |
LHK_00197 | LHK_00583 | LHK_00197 | LHK_00583 | Putative transmembrane protein precursor. | Putative inner membrane protein. | 0.698 |
LHK_00197 | LHK_00945 | LHK_00197 | LHK_00945 | Putative transmembrane protein precursor. | Probable phasin. | 0.726 |
LHK_00197 | LHK_01858 | LHK_00197 | LHK_01858 | Putative transmembrane protein precursor. | PhnO-related protein. | 0.697 |
LHK_00197 | LHK_02527 | LHK_00197 | LHK_02527 | Putative transmembrane protein precursor. | Alginate granule-binding protein. | 0.694 |
LHK_00197 | LHK_02942 | LHK_00197 | LHK_02942 | Putative transmembrane protein precursor. | Probable cytochrome c5. | 0.709 |
LHK_00197 | tatA | LHK_00197 | LHK_00194 | Putative transmembrane protein precursor. | TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.781 |
LHK_00197 | tatB | LHK_00197 | LHK_00195 | Putative transmembrane protein precursor. | Twin-arginine translocation protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.781 |
LHK_00197 | tatC | LHK_00197 | LHK_00196 | Putative transmembrane protein precursor. | TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.781 |
LHK_00583 | LHK_00125 | LHK_00583 | LHK_00125 | Putative inner membrane protein. | Hypothetical protein. | 0.671 |
LHK_00583 | LHK_00153 | LHK_00583 | LHK_00153 | Putative inner membrane protein. | Putative transmembrane protein. | 0.412 |
LHK_00583 | LHK_00197 | LHK_00583 | LHK_00197 | Putative inner membrane protein. | Putative transmembrane protein precursor. | 0.698 |
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