STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_00210ABC transporter ATP-binding protein; ABC-type branched-chain amino acid transport systems, ATPase component. (262 aa)    
Predicted Functional Partners:
LHK_00212
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
LHK_00211
Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
livM
LivM; Leucine/isoleucine/valine transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
LHK_00213
Putative branched-chain amino acid transport system substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein.
 
 
 0.986
livH
LivH; Leucine/isoleucine/valine transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.980
acs2
Acs2; Putative long-chain-fatty-acid--CoA ligase.
    0.963
LHK_01963
Probable amino acid ABC transporter.
 
 
 0.947
LHK_02100
Probable amino acid ABC transporter.
 
 
 0.944
LHK_01862
Probable amino acid ABC transporter.
 
 
 0.937
livG
LivG; Leucine/isoleucine/valine transport system ATP-binding protein.
  
  
 
0.906
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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