Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_00447 | LHK_00448 | LHK_00447 | LHK_00448 | Probable nitrate ABC transporter ATP-binding protein. | Probable ABC transporter nitrate permease. | 0.973 |
LHK_00447 | cadA-1 | LHK_00447 | LHK_00449 | Probable nitrate ABC transporter ATP-binding protein. | CadA-1; Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase. | 0.508 |
LHK_00448 | LHK_00447 | LHK_00448 | LHK_00447 | Probable ABC transporter nitrate permease. | Probable nitrate ABC transporter ATP-binding protein. | 0.973 |
LHK_00448 | cadA-1 | LHK_00448 | LHK_00449 | Probable ABC transporter nitrate permease. | CadA-1; Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase. | 0.511 |
LHK_00450 | LHK_03034 | LHK_00450 | LHK_03034 | Transcriptional regulator. | Heavy-metal-associated domain protein. | 0.533 |
LHK_00450 | LHK_03035 | LHK_00450 | LHK_03035 | Transcriptional regulator. | Copper-translocating P-type ATPase. | 0.582 |
LHK_00450 | cadA-1 | LHK_00450 | LHK_00449 | Transcriptional regulator. | CadA-1; Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase. | 0.723 |
LHK_00450 | coxB | LHK_00450 | LHK_00169 | Transcriptional regulator. | CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.400 |
LHK_00714 | LHK_01491 | LHK_00714 | LHK_01491 | Multicopper oxidase, type 3 precursor. | Probable peroxiredoxin/glutaredoxin family protein. | 0.423 |
LHK_00714 | LHK_03035 | LHK_00714 | LHK_03035 | Multicopper oxidase, type 3 precursor. | Copper-translocating P-type ATPase. | 0.743 |
LHK_00714 | cadA-1 | LHK_00714 | LHK_00449 | Multicopper oxidase, type 3 precursor. | CadA-1; Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase. | 0.459 |
LHK_00714 | coxB | LHK_00714 | LHK_00169 | Multicopper oxidase, type 3 precursor. | CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.463 |
LHK_01491 | LHK_00714 | LHK_01491 | LHK_00714 | Probable peroxiredoxin/glutaredoxin family protein. | Multicopper oxidase, type 3 precursor. | 0.423 |
LHK_01491 | LHK_03034 | LHK_01491 | LHK_03034 | Probable peroxiredoxin/glutaredoxin family protein. | Heavy-metal-associated domain protein. | 0.426 |
LHK_01491 | LHK_03035 | LHK_01491 | LHK_03035 | Probable peroxiredoxin/glutaredoxin family protein. | Copper-translocating P-type ATPase. | 0.602 |
LHK_01491 | cadA-1 | LHK_01491 | LHK_00449 | Probable peroxiredoxin/glutaredoxin family protein. | CadA-1; Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase. | 0.466 |
LHK_03034 | LHK_00450 | LHK_03034 | LHK_00450 | Heavy-metal-associated domain protein. | Transcriptional regulator. | 0.533 |
LHK_03034 | LHK_01491 | LHK_03034 | LHK_01491 | Heavy-metal-associated domain protein. | Probable peroxiredoxin/glutaredoxin family protein. | 0.426 |
LHK_03034 | LHK_03035 | LHK_03034 | LHK_03035 | Heavy-metal-associated domain protein. | Copper-translocating P-type ATPase. | 0.975 |
LHK_03034 | cadA-1 | LHK_03034 | LHK_00449 | Heavy-metal-associated domain protein. | CadA-1; Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase. | 0.793 |
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