STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_00667Probable binding protein component of ABC dipeptide transporter. (531 aa)    
Predicted Functional Partners:
dppB
DppB; Dipeptide transport system permease protein.
 0.997
dppC
DppC; Dipeptide transport system permease protein.
 0.995
dppD
DppD; Probable ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.990
dppF
DppF; Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.983
LHK_02060
Extracellular solute-binding protein, family 5; Putative oligopeptide transport protein.
  
 
0.557
ureC
Urease, alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
 0.496
yacG
DUF329 domain containing protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
       0.484
LHK_01044
Urea transporter.
     
 0.482
ureE
Urease accessory protein UreE, putative; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
     
 0.476
LHK_02812
Histidine-rich glycoprotein; Belongs to the NiCoT transporter (TC 2.A.52) family.
      
 0.475
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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