Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LHK_00693 | hflX | LHK_00693 | LHK_00692 | Probable transmembrane protein HflK; HflC and HflK could encode or regulate a protease. | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 0.933 |
| hflX | LHK_00693 | LHK_00692 | LHK_00693 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | Probable transmembrane protein HflK; HflC and HflK could encode or regulate a protease. | 0.933 |
| hflX | rplC | LHK_00692 | LHK_00253 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.903 |
| hflX | rplK | LHK_00692 | LHK_00242 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.937 |
| hflX | rplQ | LHK_00692 | LHK_00280 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RplQ; 50S ribosomal protein L17. | 0.907 |
| hflX | rplS | LHK_00692 | LHK_00363 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.910 |
| hflX | rplT | LHK_00692 | LHK_02754 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.907 |
| hflX | rplU | LHK_00692 | LHK_02967 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.911 |
| hflX | rpmA | LHK_00692 | LHK_02968 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.908 |
| hflX | rpmF | LHK_00692 | LHK_00574 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RpmF; 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.916 |
| hflX | rpmG | LHK_00692 | LHK_00543 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RpmG; 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.907 |
| rplC | hflX | LHK_00253 | LHK_00692 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 0.903 |
| rplC | rplK | LHK_00253 | LHK_00242 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
| rplC | rplQ | LHK_00253 | LHK_00280 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RplQ; 50S ribosomal protein L17. | 0.998 |
| rplC | rplS | LHK_00253 | LHK_00363 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.996 |
| rplC | rplT | LHK_00253 | LHK_02754 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.996 |
| rplC | rplU | LHK_00253 | LHK_02967 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.996 |
| rplC | rpmA | LHK_00253 | LHK_02968 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.997 |
| rplC | rpmF | LHK_00253 | LHK_00574 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RpmF; 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.987 |
| rplC | rpmG | LHK_00253 | LHK_00543 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | RpmG; 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.995 |
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