STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_00835Putative glycosyl transferase family 2. (397 aa)    
Predicted Functional Partners:
LHK_00834
Chain length determinant protein.
 
  
 0.804
LHK_01056
Hypothetical protein.
  
 
 0.717
LHK_01955
Putative inner membrane protein.
  
 
 0.717
LHK_00822
Putative PAS/PAC sensor protein.
  
  
 0.711
LHK_00833
Teichoic acid biosynthesis protein; Belongs to the glycosyltransferase 26 family.
   
 0.664
LHK_01420
Hypothetical protein.
  
 
 0.664
radC
RadC; DNA repair protein radC homolog; Belongs to the UPF0758 family.
  
    0.641
LHK_01200
Polysaccharide deacetylase family protein.
  
  
 0.631
LHK_01015
Sensor protein.
  
 
 0.588
LHK_03146
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
    0.583
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.