STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_00838Probable transcriptional regulator. (450 aa)    
Predicted Functional Partners:
rpoN
RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.835
LHK_01015
Sensor protein.
     
 0.536
LHK_00822
Putative PAS/PAC sensor protein.
     
 0.527
LHK_00307
Regulatory protein MerR.
     
 0.512
LHK_00129
Sensory box/GGDEF family protein.
     
 0.448
LHK_00673
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
     
 0.448
LHK_02365
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
     
 0.448
LHK_00839
N-Dimethylarginine dimethylaminohydrolase.
       0.440
LHK_00711
GGDEF domain protein.
     
 0.430
LHK_00815
Diguanylate cyclase/phosphodiesterase domain 2.
    
 0.430
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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