STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_00917Auxiliary mobilization protein C. (98 aa)    
Predicted Functional Partners:
LHK_00918
Relaxase/mobilization nuclease topoisomerase/primase fusion protein.
  
    0.808
LHK_01183
Binding-protein-dependent transport systems inner membrane component.
  
  
 0.566
LHK_00738
Flavin reductase domain protein FMN-binding.
  
  
 0.558
ubiB
UbiB; NAD(P)H-flavin reductase.
  
  
 0.498
LHK_01182
Putative solute-binding periplasmic protein of ABC transport precursor.
  
  
 0.487
LHK_02897
Putative aliphatic sulfonates binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
  
 0.487
topA
TopA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally [...]
     
 0.449
macB
ABC transporter, ATP-binding/permease protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
     
 0.418
LHK_00447
Probable nitrate ABC transporter ATP-binding protein.
  
  
 0.417
LHK_01184
ABC transporter related.
  
  
 0.417
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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