STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_00985TRAP dicarboxylate transporter, DctM subunit. (414 aa)    
Predicted Functional Partners:
LHK_00984
C4-dicarboxylate transport system, permease small subunit.
 
 
 0.971
LHK_00983
DctP.
  
 0.962
dctQ
DctQ; C4-dicarboxylate transport system, permease small subunit.
 
 0.960
LHK_01392
TRAP dicarboxylate transporter, DctM subunit precursor.
  
  
 
0.915
LHK_01394
Probable C4-dicarboxylate-binding periplasmic protein.
  
 0.877
LHK_00986
Hypothetical protein.
       0.732
ybbS
YbbS; HTH-type transcriptional activator allS; Belongs to the LysR transcriptional regulatory family.
  
    0.684
ylbF
YlbF; Putative cytoplasmic protein.
       0.682
fdrA
FdrA protein.
  
    0.614
ylbE
ylbE; putative cytoplasmic protein.
  
    0.588
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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