Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_00441 | ureB | LHK_00441 | LHK_01036 | flgG; Flagellar basal-body rod protein FlgG; similar to RS00748. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.681 |
LHK_00441 | ureC | LHK_00441 | LHK_01037 | flgG; Flagellar basal-body rod protein FlgG; similar to RS00748. | Urease, alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.680 |
LHK_01044 | arcA-1 | LHK_01044 | LHK_02729 | Urea transporter. | ArcA; Arginine deiminase. | 0.454 |
LHK_01044 | ureA | LHK_01044 | LHK_01035 | Urea transporter. | Urease, gamma subunit; Belongs to the urease gamma subunit family. | 0.811 |
LHK_01044 | ureB | LHK_01044 | LHK_01036 | Urea transporter. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.586 |
LHK_01044 | ureC | LHK_01044 | LHK_01037 | Urea transporter. | Urease, alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.845 |
LHK_01044 | ureD | LHK_01044 | LHK_01043 | Urea transporter. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.898 |
LHK_01044 | ureE | LHK_01044 | LHK_01040 | Urea transporter. | Urease accessory protein UreE, putative; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.962 |
LHK_01044 | ureF | LHK_01044 | LHK_01041 | Urea transporter. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.931 |
LHK_01044 | ureG | LHK_01044 | LHK_01042 | Urea transporter. | UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.851 |
arcA-1 | LHK_01044 | LHK_02729 | LHK_01044 | ArcA; Arginine deiminase. | Urea transporter. | 0.454 |
arcA-1 | arcC-2 | LHK_02729 | LHK_02732 | ArcA; Arginine deiminase. | ArcC; Carbamate kinase; Belongs to the carbamate kinase family. | 0.952 |
arcA-1 | ureB | LHK_02729 | LHK_01036 | ArcA; Arginine deiminase. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.560 |
arcA-1 | ureC | LHK_02729 | LHK_01037 | ArcA; Arginine deiminase. | Urease, alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.686 |
arcA-1 | ureD | LHK_02729 | LHK_01043 | ArcA; Arginine deiminase. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.561 |
arcA-1 | ureE | LHK_02729 | LHK_01040 | ArcA; Arginine deiminase. | Urease accessory protein UreE, putative; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.687 |
arcA-1 | ureF | LHK_02729 | LHK_01041 | ArcA; Arginine deiminase. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.510 |
arcA-1 | ureG | LHK_02729 | LHK_01042 | ArcA; Arginine deiminase. | UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.561 |
arcC-2 | arcA-1 | LHK_02732 | LHK_02729 | ArcC; Carbamate kinase; Belongs to the carbamate kinase family. | ArcA; Arginine deiminase. | 0.952 |
arcC-2 | ureB | LHK_02732 | LHK_01036 | ArcC; Carbamate kinase; Belongs to the carbamate kinase family. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.493 |
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