STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01045Cobalamin (Vitamin B12) biosynthesis CbiM protein precursor. (354 aa)    
Predicted Functional Partners:
LHK_01077
Cobalt ABC transporter CbiQ, permease subunit.
 
 0.993
LHK_01078
Cobalt ABC transporter, ATPase subunit.
 
 0.988
LHK_01248
Hypothetical protein.
  
 
 0.862
LHK_01956
Putative permease protein of ABC-type cobalt transporter; Putative ABC-type cobalt transport system.
  
 
 0.862
cysA
CysA; Possible ABC-transport protein, ATP-binding component.
 
 
 0.852
LHK_01957
Possible ABC-transport protein, ATP-binding component.
 
 
 0.760
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
     0.498
ureG
UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
       0.478
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
       0.478
LHK_01044
Urea transporter.
       0.474
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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