STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01059Probable ABC transport system ATP-binding protein. (270 aa)    
Predicted Functional Partners:
LHK_01060
Probable ABC transport system permease protein.
 0.999
LHK_01061
Probable ABC transport system substrate-binding protein.
 
 0.997
LHK_00627
ABC-type transport system, permease component.
 0.992
LHK_01062
Probable ABC superfamily, transport protein.
  
 
 0.950
LHK_01063
Hypothetical protein.
    
  0.919
LHK_00626
ABC-type transport system, ATPase component.
  
  
 
0.913
msbA
MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
    
0.908
LHK_01957
Possible ABC-transport protein, ATP-binding component.
 
    
0.838
LHK_00625
Possible ABC transport system periplasmic substrate-binding protein.
  
 
 0.776
LHK_00821
Anti-sigma-factor antagonist.
   
   0.769
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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