Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
LHK_00705 | LHK_00711 | Sensor protein. | GGDEF domain protein. | 0.748 |
LHK_00705 | LHK_00815 | Sensor protein. | Diguanylate cyclase/phosphodiesterase domain 2. | 0.749 |
LHK_00705 | LHK_00860 | Sensor protein. | GGDEF family protein. | 0.434 |
LHK_00705 | LHK_01126 | Sensor protein. | EAL domain protein. | 0.978 |
LHK_00711 | LHK_00705 | GGDEF domain protein. | Sensor protein. | 0.748 |
LHK_00711 | LHK_00815 | GGDEF domain protein. | Diguanylate cyclase/phosphodiesterase domain 2. | 0.863 |
LHK_00711 | LHK_00860 | GGDEF domain protein. | GGDEF family protein. | 0.673 |
LHK_00711 | LHK_00948 | GGDEF domain protein. | GGDEF domain protein. | 0.402 |
LHK_00711 | LHK_01098 | GGDEF domain protein. | Diguanylate cyclase. | 0.406 |
LHK_00711 | LHK_01126 | GGDEF domain protein. | EAL domain protein. | 0.987 |
LHK_00711 | LHK_01129 | GGDEF domain protein. | GGDEF domain protein. | 0.779 |
LHK_00711 | LHK_02652 | GGDEF domain protein. | Diguanylate cyclase. | 0.417 |
LHK_00815 | LHK_00705 | Diguanylate cyclase/phosphodiesterase domain 2. | Sensor protein. | 0.749 |
LHK_00815 | LHK_00711 | Diguanylate cyclase/phosphodiesterase domain 2. | GGDEF domain protein. | 0.863 |
LHK_00815 | LHK_00860 | Diguanylate cyclase/phosphodiesterase domain 2. | GGDEF family protein. | 0.673 |
LHK_00815 | LHK_00948 | Diguanylate cyclase/phosphodiesterase domain 2. | GGDEF domain protein. | 0.400 |
LHK_00815 | LHK_01031 | Diguanylate cyclase/phosphodiesterase domain 2. | Sensor protein. | 0.597 |
LHK_00815 | LHK_01098 | Diguanylate cyclase/phosphodiesterase domain 2. | Diguanylate cyclase. | 0.402 |
LHK_00815 | LHK_01126 | Diguanylate cyclase/phosphodiesterase domain 2. | EAL domain protein. | 0.987 |
LHK_00815 | LHK_01129 | Diguanylate cyclase/phosphodiesterase domain 2. | GGDEF domain protein. | 0.676 |
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