Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_00105 | LHK_00822 | LHK_00105 | LHK_00822 | Sensor protein. | Putative PAS/PAC sensor protein. | 0.998 |
LHK_00105 | LHK_00888 | LHK_00105 | LHK_00888 | Sensor protein. | Sensor protein. | 0.447 |
LHK_00105 | LHK_01015 | LHK_00105 | LHK_01015 | Sensor protein. | Sensor protein. | 0.990 |
LHK_00105 | LHK_01135 | LHK_00105 | LHK_01135 | Sensor protein. | Two component transcriptional regulator, winged helix family. | 0.808 |
LHK_00105 | LHK_01136 | LHK_00105 | LHK_01136 | Sensor protein. | Signal transduction histidine kinase. | 0.795 |
LHK_00105 | LHK_02199 | LHK_00105 | LHK_02199 | Sensor protein. | Sensor protein. | 0.785 |
LHK_00105 | LHK_02200 | LHK_00105 | LHK_02200 | Sensor protein. | DNA-binding response regulator. | 0.818 |
LHK_00105 | phoR | LHK_00105 | LHK_00166 | Sensor protein. | PhoR; Sensor protein. | 0.712 |
LHK_00105 | qseC-1 | LHK_00105 | LHK_00328 | Sensor protein. | QseC; Sensor protein. | 0.403 |
LHK_00105 | qseC-2 | LHK_00105 | LHK_01813 | Sensor protein. | QseC; Sensor protein. | 0.481 |
LHK_00822 | LHK_00105 | LHK_00822 | LHK_00105 | Putative PAS/PAC sensor protein. | Sensor protein. | 0.998 |
LHK_00822 | LHK_00888 | LHK_00822 | LHK_00888 | Putative PAS/PAC sensor protein. | Sensor protein. | 0.848 |
LHK_00822 | LHK_01015 | LHK_00822 | LHK_01015 | Putative PAS/PAC sensor protein. | Sensor protein. | 0.999 |
LHK_00822 | LHK_01135 | LHK_00822 | LHK_01135 | Putative PAS/PAC sensor protein. | Two component transcriptional regulator, winged helix family. | 0.897 |
LHK_00822 | LHK_01136 | LHK_00822 | LHK_01136 | Putative PAS/PAC sensor protein. | Signal transduction histidine kinase. | 0.846 |
LHK_00822 | LHK_02199 | LHK_00822 | LHK_02199 | Putative PAS/PAC sensor protein. | Sensor protein. | 0.946 |
LHK_00822 | LHK_02200 | LHK_00822 | LHK_02200 | Putative PAS/PAC sensor protein. | DNA-binding response regulator. | 0.767 |
LHK_00822 | phoR | LHK_00822 | LHK_00166 | Putative PAS/PAC sensor protein. | PhoR; Sensor protein. | 0.845 |
LHK_00822 | qseC-1 | LHK_00822 | LHK_00328 | Putative PAS/PAC sensor protein. | QseC; Sensor protein. | 0.941 |
LHK_00822 | qseC-2 | LHK_00822 | LHK_01813 | Putative PAS/PAC sensor protein. | QseC; Sensor protein. | 0.960 |
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