STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chuWChuW; Probable oxygen-independent coproporphyrinogen III oxidase. (452 aa)    
Predicted Functional Partners:
ompW
OmpW; Outer membrane protein W.
  
  
 0.681
LHK_01197
NAD dependent epimerase/dehydratase family.
 
    0.677
rlmN
Radical SAM domain containing protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
   
 0.537
gltB
GltB; Glutamate synthase, large subunit.
     
 0.529
LHK_01194
Hypothetical protein.
  
    0.528
LHK_01193
Probable TonB-dependent receptor.
 
   
 0.508
mutY
MutY; Adenine glycosylase active on G-A mispairs.
  
    0.484
LHK_00995
Probable cytochrome-c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.482
narX
NarX; Transmembrane nitrate/nitrite sensor kinase transcription regulator protein.
  
    0.451
LHK_00996
Probable cytochrome-c oxidase, subunit II.
  
  
 0.447
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.