STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampAAmpA; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (525 aa)    
Predicted Functional Partners:
pepN
PepN; Aminopeptidase N.
  
 0.947
gshB
GshB; Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
   
 
 0.945
pepD
PepD; Aminoacyl-histidine dipeptidase.
   
 
 0.919
LHK_03085
Probable glutamate-cysteine ligase.
    
 0.903
ybdK
YbdK; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
     
  0.900
holC
HolC; DNA polymerase III, chi subunit.
  
  
 0.885
glyA
GlyA; Serine hydroxymethyltransferase.
  
 
 0.829
LHK_00971
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 0.825
LHK_02678
Putative cysteine synthase/cystathionine.
   
 0.825
LHK_01340
Aspartate aminotransferase.
   
  0.818
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.