STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01425Cation/multidrug efflux pump. (1056 aa)    
Predicted Functional Partners:
LHK_01426
Efflux transporter, RND family, MFP subunit; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.996
LHK_01424
RND efflux system, outer membrane lipoprotein, NodT family precursor.
 0.993
LHK_02129
Multidrug resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.993
LHK_02929
Probable multidrug efflux membrane permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.992
oprM
OprM; Outer membrane efflux protein.
 0.982
LHK_02131
RND efflux system, outer membrane lipoprotein, NodT family precursor.
 0.972
LHK_02241
Putative outer membrane transport protein involved in copper (Silver) tolerance.
 0.966
LHK_00138
Outer membrane protein.
  
 0.931
natC
NatC; Periplasmic type I secretion system.
  
 0.931
LHK_02130
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Hydrophobe/amphiphile efflux-1 HAE1 precursor.
  
  
 
0.908
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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