STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01449Hydrolase, alpha/beta fold family. (324 aa)    
Predicted Functional Partners:
LHK_01451
Similar to UPF0307 protein CV_3198; Belongs to the UPF0307 family.
       0.803
LHK_01453
Radical SAM domain protein.
  
    0.778
mogA
MogA; Molybdopterin biosynthesis Mog protein.
       0.773
trpC
TrpC; Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
  
    0.730
LHK_01454
Universal stress protein.
       0.542
LHK_01447
Outer membrane protein A.
       0.523
LHK_00970
Probable ion transporter.
  
     0.404
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.