STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01590Probable iron uptake ABC transporter periplasmic solute-binding protein. (337 aa)    
Predicted Functional Partners:
LHK_01593
Probable ABC transporter permease protein.
 
 
 0.998
cysA2
CysA2; Sulfate/thiosulfate import ATP-binding protein cysA 2; Belongs to the ABC transporter superfamily.
 
 0.996
fbpB
FbpB; ABC transport system, permease protein.
 
 
 0.942
fbpA
FbpA; ABC transporter, iron binding protein.
  
  
0.919
LHK_02636
Putative iron transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.882
LHK_03045
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
      
 0.648
phnF
PhnF; Transcriptional regulator, GntR family.
       0.549
LHK_00978
Major facilitator family transporter.
  
  
 0.547
phnN
PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
       0.540
motB
MotB; Chemotaxis motB protein.
    
 
 0.503
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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