Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
LHK_01526 | LHK_01728 | Prim_Zn_Ribbon domain containing protein. | Inner membrane protein. | 0.491 |
LHK_01526 | LHK_01729 | Prim_Zn_Ribbon domain containing protein. | Inner membrane protein. | 0.482 |
LHK_01526 | LHK_02469 | Prim_Zn_Ribbon domain containing protein. | Phage P4 alpha, zinc-binding domain protein. | 0.543 |
LHK_01727 | LHK_01728 | Hypothetical protein. | Inner membrane protein. | 0.773 |
LHK_01727 | LHK_01729 | Hypothetical protein. | Inner membrane protein. | 0.532 |
LHK_01727 | LHK_01730 | Hypothetical protein. | Hypothetical protein. | 0.532 |
LHK_01727 | LHK_01731 | Hypothetical protein. | Hypothetical protein. | 0.532 |
LHK_01727 | LHK_01732 | Hypothetical protein. | Hypothetical protein. | 0.532 |
LHK_01728 | LHK_01526 | Inner membrane protein. | Prim_Zn_Ribbon domain containing protein. | 0.491 |
LHK_01728 | LHK_01727 | Inner membrane protein. | Hypothetical protein. | 0.773 |
LHK_01728 | LHK_01729 | Inner membrane protein. | Inner membrane protein. | 0.988 |
LHK_01728 | LHK_01730 | Inner membrane protein. | Hypothetical protein. | 0.532 |
LHK_01728 | LHK_01731 | Inner membrane protein. | Hypothetical protein. | 0.532 |
LHK_01728 | LHK_01732 | Inner membrane protein. | Hypothetical protein. | 0.532 |
LHK_01728 | LHK_02469 | Inner membrane protein. | Phage P4 alpha, zinc-binding domain protein. | 0.559 |
LHK_01729 | LHK_01526 | Inner membrane protein. | Prim_Zn_Ribbon domain containing protein. | 0.482 |
LHK_01729 | LHK_01727 | Inner membrane protein. | Hypothetical protein. | 0.532 |
LHK_01729 | LHK_01728 | Inner membrane protein. | Inner membrane protein. | 0.988 |
LHK_01729 | LHK_01730 | Inner membrane protein. | Hypothetical protein. | 0.773 |
LHK_01729 | LHK_01731 | Inner membrane protein. | Hypothetical protein. | 0.773 |
page 1 of 2