STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01822Hypothetical protein. (185 aa)    
Predicted Functional Partners:
trmU
TrmU; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.806
nudJ
NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily.
       0.806
LHK_00048
Possible transmembrane protein.
  
     0.616
LHK_01651
Putative capsid protein of prophage.
  
     0.602
LHK_01824
Hypothetical protein.
       0.586
LHK_01825
Probable ubiquinone biosynthesis protein.
       0.586
LHK_02991
Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain.
  
     0.536
LHK_03126
Putative lipoprotein.
  
     0.504
LHK_00341
DUF1853 domain containing protein.
  
     0.466
LHK_00308
Predicted integral membrane protein.
  
     0.461
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.