STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01892Hypothetical protein. (100 aa)    
Predicted Functional Partners:
tolB
TolB; Protein tolB precursor.
  
 
 0.720
ompH
OmpH; Outer membrane protein; Belongs to the skp family.
  
 
 0.549
LHK_01891
Probable hydrogenase cytochrome b-type subunit.
       0.517
rpsF
RpsF; Binds together with S18 to 16S ribosomal RNA.
  
   0.477
LHK_01015
Sensor protein.
  
 
 0.465
rpsN
RpsN; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 
 0.415
rpsL
RpsL; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.414
rpsB
RpsB; 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
 
 0.413
rplM
RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.413
rpmI
RpmI; 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.407
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.