STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
astAAstA; Arginine N-succinyltransferase. (345 aa)    
Predicted Functional Partners:
aruF
AruF; Arginine N-succinyltransferase.
 
  
 
0.982
argD
ArgD; Acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 0.936
speA
SpeA; Catalyzes the biosynthesis of agmatine from arginine.
  
  
  0.913
adi
Adi; Arginine decarboxylase.
   
 
  0.909
LHK_03077
Glycine amidinotransferase.
    
  0.900
arcA-1
ArcA; Arginine deiminase.
     
 0.805
arcA-2
ArcA; Arginine deiminase.
     
 0.805
arlY
ArlY; Argininosuccinate lyase.
     
 0.803
LHK_01915
Hypothetical protein.
       0.773
LHK_00946
Zinc-carboxypeptidase.
  
     0.537
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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