STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01944NADH-dependent butanol dehydrogenase B. (383 aa)    
Predicted Functional Partners:
yqhD
YqhD; Putative alcohol dehydrogenase.
  
  
 
0.907
guaA
GuaA; Catalyzes the synthesis of GMP from XMP.
  
    0.838
LHK_01945
Hypothetical protein.
       0.473
LHK_02213
Probable aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.426
arcA-1
ArcA; Arginine deiminase.
   
    0.420
arcA-2
ArcA; Arginine deiminase.
   
    0.420
LHK_01486
Probable NADH-ubiquinone oxidoreductase.
  
    0.410
darR
darR; probable AraC family transcriptional regulator.
   
    0.402
LHK_01935
Hypothetical protein.
   
    0.402
LHK_02171
Transcriptional regulator, AraC family protein.
   
    0.402
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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