Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_00441 | kef | LHK_00441 | LHK_02848 | flgG; Flagellar basal-body rod protein FlgG; similar to RS00748. | Kef; Glutathione-regulated potassium-efflux system protein kefC (K()/H() antiporter); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.751 |
LHK_00441 | kefB | LHK_00441 | LHK_02018 | flgG; Flagellar basal-body rod protein FlgG; similar to RS00748. | KefB; Glutathione-regulated potassium-efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.751 |
LHK_00707 | kef | LHK_00707 | LHK_02848 | Putative Na/H antiporter. | Kef; Glutathione-regulated potassium-efflux system protein kefC (K()/H() antiporter); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.665 |
LHK_00707 | kefB | LHK_00707 | LHK_02018 | Putative Na/H antiporter. | KefB; Glutathione-regulated potassium-efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.665 |
LHK_00970 | kef | LHK_00970 | LHK_02848 | Probable ion transporter. | Kef; Glutathione-regulated potassium-efflux system protein kefC (K()/H() antiporter); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.641 |
LHK_00970 | kefB | LHK_00970 | LHK_02018 | Probable ion transporter. | KefB; Glutathione-regulated potassium-efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.629 |
LHK_02016 | LHK_02019 | LHK_02016 | LHK_02019 | Hypothetical protein. | Sugar isomerase, KpsF/GutQ family. | 0.457 |
LHK_02016 | LHK_02020 | LHK_02016 | LHK_02020 | Hypothetical protein. | Sugar phosphate isomerase (Involved in capsule formation) protein. | 0.457 |
LHK_02016 | LHK_02021 | LHK_02016 | LHK_02021 | Hypothetical protein. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. | 0.457 |
LHK_02016 | kefB | LHK_02016 | LHK_02018 | Hypothetical protein. | KefB; Glutathione-regulated potassium-efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.636 |
LHK_02016 | pdxH | LHK_02016 | LHK_02017 | Hypothetical protein. | PdxH; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.636 |
LHK_02016 | rpoN | LHK_02016 | LHK_02025 | Hypothetical protein. | RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.457 |
LHK_02019 | LHK_02016 | LHK_02019 | LHK_02016 | Sugar isomerase, KpsF/GutQ family. | Hypothetical protein. | 0.457 |
LHK_02019 | LHK_02020 | LHK_02019 | LHK_02020 | Sugar isomerase, KpsF/GutQ family. | Sugar phosphate isomerase (Involved in capsule formation) protein. | 0.994 |
LHK_02019 | LHK_02021 | LHK_02019 | LHK_02021 | Sugar isomerase, KpsF/GutQ family. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. | 0.992 |
LHK_02019 | kefB | LHK_02019 | LHK_02018 | Sugar isomerase, KpsF/GutQ family. | KefB; Glutathione-regulated potassium-efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.629 |
LHK_02019 | pdxH | LHK_02019 | LHK_02017 | Sugar isomerase, KpsF/GutQ family. | PdxH; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.546 |
LHK_02019 | rpoN | LHK_02019 | LHK_02025 | Sugar isomerase, KpsF/GutQ family. | RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.796 |
LHK_02020 | LHK_02016 | LHK_02020 | LHK_02016 | Sugar phosphate isomerase (Involved in capsule formation) protein. | Hypothetical protein. | 0.457 |
LHK_02020 | LHK_02019 | LHK_02020 | LHK_02019 | Sugar phosphate isomerase (Involved in capsule formation) protein. | Sugar isomerase, KpsF/GutQ family. | 0.994 |
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