STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_02026Probable sigma-54 modulation protein. (112 aa)    
Predicted Functional Partners:
rpsU
RpsU; 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.952
rplM
RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
   0.945
rpsI
RpsI; 30S ribosomal protein S9.
   
 
 0.944
rpmA
RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.944
rpmH
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.944
rpmC
RpmC; 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.943
rpmG
RpmG; 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.943
rpmB
RpmB; 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.943
rplI
RplI; Binds to the 23S rRNA.
  
   0.943
rpsP
RpsP; 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.941
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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