STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_02100Probable amino acid ABC transporter. (403 aa)    
Predicted Functional Partners:
livM
LivM; Leucine/isoleucine/valine transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.979
livH
LivH; Leucine/isoleucine/valine transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.979
livG
LivG; Leucine/isoleucine/valine transport system ATP-binding protein.
 
 
 0.973
livF-2
LivF; Leucine/isoleucine/valine transport system ATP-binding protein.
 
 
 0.971
LHK_00211
Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.956
LHK_00212
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.950
LHK_00210
ABC transporter ATP-binding protein; ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.944
livF-1
LivF; ABC transporter ATP-binding protein.
 
 
 0.941
LHK_01862
Probable amino acid ABC transporter.
  
  
 
0.903
LHK_01963
Probable amino acid ABC transporter.
  
  
 
0.902
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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