Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_02140 | LHK_02141 | LHK_02140 | LHK_02141 | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. | Peptidase U62, modulator of DNA gyrase; Probable tldD protein family. | 0.427 |
LHK_02140 | LHK_02142 | LHK_02140 | LHK_02142 | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. | Probable nitrilase. | 0.470 |
LHK_02140 | birA | LHK_02140 | LHK_03252 | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. | BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.431 |
LHK_02140 | pepP | LHK_02140 | LHK_02138 | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. | PepP; Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family. | 0.475 |
LHK_02141 | LHK_02140 | LHK_02141 | LHK_02140 | Peptidase U62, modulator of DNA gyrase; Probable tldD protein family. | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. | 0.427 |
LHK_02141 | LHK_02142 | LHK_02141 | LHK_02142 | Peptidase U62, modulator of DNA gyrase; Probable tldD protein family. | Probable nitrilase. | 0.756 |
LHK_02141 | LHK_02143 | LHK_02141 | LHK_02143 | Peptidase U62, modulator of DNA gyrase; Probable tldD protein family. | Probable transmembrane protein. | 0.758 |
LHK_02141 | glnE | LHK_02141 | LHK_02144 | Peptidase U62, modulator of DNA gyrase; Probable tldD protein family. | GlnE; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicate [...] | 0.617 |
LHK_02142 | LHK_02140 | LHK_02142 | LHK_02140 | Probable nitrilase. | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. | 0.470 |
LHK_02142 | LHK_02141 | LHK_02142 | LHK_02141 | Probable nitrilase. | Peptidase U62, modulator of DNA gyrase; Probable tldD protein family. | 0.756 |
LHK_02142 | LHK_02143 | LHK_02142 | LHK_02143 | Probable nitrilase. | Probable transmembrane protein. | 0.839 |
LHK_02142 | LHK_02173 | LHK_02142 | LHK_02173 | Probable nitrilase. | Probable MFS transporter. | 0.476 |
LHK_02142 | birA | LHK_02142 | LHK_03252 | Probable nitrilase. | BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.525 |
LHK_02142 | glnE | LHK_02142 | LHK_02144 | Probable nitrilase. | GlnE; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicate [...] | 0.634 |
LHK_02142 | guaA | LHK_02142 | LHK_00777 | Probable nitrilase. | GuaA; Catalyzes the synthesis of GMP from XMP. | 0.540 |
LHK_02142 | ilvE | LHK_02142 | LHK_02145 | Probable nitrilase. | IlvE; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.459 |
LHK_02142 | pepP | LHK_02142 | LHK_02138 | Probable nitrilase. | PepP; Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family. | 0.489 |
LHK_02142 | purL | LHK_02142 | LHK_01237 | Probable nitrilase. | PurL; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.533 |
LHK_02143 | LHK_02141 | LHK_02143 | LHK_02141 | Probable transmembrane protein. | Peptidase U62, modulator of DNA gyrase; Probable tldD protein family. | 0.758 |
LHK_02143 | LHK_02142 | LHK_02143 | LHK_02142 | Probable transmembrane protein. | Probable nitrilase. | 0.839 |
page 1 of 3