Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_02152 | LHK_02154 | LHK_02152 | LHK_02154 | Hypothetical protein. | Probable L-allo-threonine aldolase. | 0.484 |
LHK_02152 | acnA | LHK_02152 | LHK_02153 | Hypothetical protein. | AcnA; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.651 |
LHK_02154 | LHK_02152 | LHK_02154 | LHK_02152 | Probable L-allo-threonine aldolase. | Hypothetical protein. | 0.484 |
LHK_02154 | LHK_02155 | LHK_02154 | LHK_02155 | Probable L-allo-threonine aldolase. | Probable transmembrane protein. | 0.494 |
LHK_02154 | LHK_03077 | LHK_02154 | LHK_03077 | Probable L-allo-threonine aldolase. | Glycine amidinotransferase. | 0.901 |
LHK_02154 | acnA | LHK_02154 | LHK_02153 | Probable L-allo-threonine aldolase. | AcnA; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.566 |
LHK_02154 | gcsP | LHK_02154 | LHK_02722 | Probable L-allo-threonine aldolase. | GcsP; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.952 |
LHK_02154 | glyA | LHK_02154 | LHK_00729 | Probable L-allo-threonine aldolase. | GlyA; Serine hydroxymethyltransferase. | 0.943 |
LHK_02154 | ilvA | LHK_02154 | LHK_00976 | Probable L-allo-threonine aldolase. | IlvA; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.938 |
LHK_02154 | ribD | LHK_02154 | LHK_00732 | Probable L-allo-threonine aldolase. | RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.424 |
LHK_02154 | thrC | LHK_02154 | LHK_00587 | Probable L-allo-threonine aldolase. | ThrC; Threonine synthase. | 0.927 |
LHK_02154 | ychF | LHK_02154 | LHK_00345 | Probable L-allo-threonine aldolase. | YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.865 |
LHK_02155 | LHK_02154 | LHK_02155 | LHK_02154 | Probable transmembrane protein. | Probable L-allo-threonine aldolase. | 0.494 |
LHK_03077 | LHK_02154 | LHK_03077 | LHK_02154 | Glycine amidinotransferase. | Probable L-allo-threonine aldolase. | 0.901 |
LHK_03077 | gcsP | LHK_03077 | LHK_02722 | Glycine amidinotransferase. | GcsP; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.900 |
LHK_03077 | glyA | LHK_03077 | LHK_00729 | Glycine amidinotransferase. | GlyA; Serine hydroxymethyltransferase. | 0.900 |
acnA | LHK_02152 | LHK_02153 | LHK_02152 | AcnA; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Hypothetical protein. | 0.651 |
acnA | LHK_02154 | LHK_02153 | LHK_02154 | AcnA; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Probable L-allo-threonine aldolase. | 0.566 |
acnA | gcsP | LHK_02153 | LHK_02722 | AcnA; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | GcsP; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.542 |
gcsP | LHK_02154 | LHK_02722 | LHK_02154 | GcsP; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Probable L-allo-threonine aldolase. | 0.952 |
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