Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_02446 | LHK_02449 | LHK_02446 | LHK_02449 | Hypothetical protein. | DUF502 domain containing protein. | 0.516 |
LHK_02446 | LHK_02450 | LHK_02446 | LHK_02450 | Hypothetical protein. | Type I antifreeze protein. | 0.516 |
LHK_02446 | LHK_02451 | LHK_02446 | LHK_02451 | Hypothetical protein. | Hypothetical protein. | 0.404 |
LHK_02446 | syd | LHK_02446 | LHK_02448 | Hypothetical protein. | Syd; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.568 |
LHK_02446 | xthA | LHK_02446 | LHK_02447 | Hypothetical protein. | XthA; Exodeoxyribonuclease III. | 0.773 |
LHK_02449 | LHK_02446 | LHK_02449 | LHK_02446 | DUF502 domain containing protein. | Hypothetical protein. | 0.516 |
LHK_02449 | LHK_02450 | LHK_02449 | LHK_02450 | DUF502 domain containing protein. | Type I antifreeze protein. | 0.815 |
LHK_02449 | LHK_02451 | LHK_02449 | LHK_02451 | DUF502 domain containing protein. | Hypothetical protein. | 0.585 |
LHK_02449 | ackA | LHK_02449 | LHK_02453 | DUF502 domain containing protein. | Probable member of the acetate kinase family; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.437 |
LHK_02449 | ptb | LHK_02449 | LHK_02452 | DUF502 domain containing protein. | Ptb; Phosphate acetyltransferase. | 0.437 |
LHK_02449 | syd | LHK_02449 | LHK_02448 | DUF502 domain containing protein. | Syd; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.753 |
LHK_02449 | xthA | LHK_02449 | LHK_02447 | DUF502 domain containing protein. | XthA; Exodeoxyribonuclease III. | 0.516 |
LHK_02450 | LHK_02446 | LHK_02450 | LHK_02446 | Type I antifreeze protein. | Hypothetical protein. | 0.516 |
LHK_02450 | LHK_02449 | LHK_02450 | LHK_02449 | Type I antifreeze protein. | DUF502 domain containing protein. | 0.815 |
LHK_02450 | LHK_02451 | LHK_02450 | LHK_02451 | Type I antifreeze protein. | Hypothetical protein. | 0.586 |
LHK_02450 | ackA | LHK_02450 | LHK_02453 | Type I antifreeze protein. | Probable member of the acetate kinase family; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.437 |
LHK_02450 | ptb | LHK_02450 | LHK_02452 | Type I antifreeze protein. | Ptb; Phosphate acetyltransferase. | 0.440 |
LHK_02450 | syd | LHK_02450 | LHK_02448 | Type I antifreeze protein. | Syd; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.742 |
LHK_02450 | xthA | LHK_02450 | LHK_02447 | Type I antifreeze protein. | XthA; Exodeoxyribonuclease III. | 0.516 |
LHK_02451 | LHK_02446 | LHK_02451 | LHK_02446 | Hypothetical protein. | Hypothetical protein. | 0.404 |
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