STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cybBCybB; Cytochrome b561. (182 aa)    
Predicted Functional Partners:
LHK_02513
Hypothetical protein.
       0.773
LHK_02511
Probable transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.620
LHK_02515
ErfK/YbiS/YcfS/YnhG protein.
       0.570
LHK_02516
ErfK/YbiS/YcfS/YnhG family protein.
       0.570
cumB
CumB; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.554
LHK_02517
Hypothetical protein.
       0.461
LHK_01295
Dolichyl-phosphate-mannose-protein mannosyltransferase family protein.
  
     0.405
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.