Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_01968 | LHK_01970 | LHK_01968 | LHK_01970 | Cyanophycin synthetase. | ATP-grasp enzyme-like D-alanine-D-alanine ligase; Belongs to the MurCDEF family. | 0.937 |
LHK_01968 | ftsW | LHK_01968 | LHK_03057 | Cyanophycin synthetase. | FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.705 |
LHK_01968 | pbpG | LHK_01968 | LHK_02726 | Cyanophycin synthetase. | PbpG; D-alanyl-D-alanine-endopeptidase; Belongs to the peptidase S11 family. | 0.543 |
LHK_01970 | LHK_01968 | LHK_01970 | LHK_01968 | ATP-grasp enzyme-like D-alanine-D-alanine ligase; Belongs to the MurCDEF family. | Cyanophycin synthetase. | 0.937 |
LHK_01970 | ftsW | LHK_01970 | LHK_03057 | ATP-grasp enzyme-like D-alanine-D-alanine ligase; Belongs to the MurCDEF family. | FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.705 |
LHK_01970 | pbpG | LHK_01970 | LHK_02726 | ATP-grasp enzyme-like D-alanine-D-alanine ligase; Belongs to the MurCDEF family. | PbpG; D-alanyl-D-alanine-endopeptidase; Belongs to the peptidase S11 family. | 0.543 |
LHK_02725 | pbpG | LHK_02725 | LHK_02726 | Heme oxygenase. | PbpG; D-alanyl-D-alanine-endopeptidase; Belongs to the peptidase S11 family. | 0.483 |
ftsW | LHK_01968 | LHK_03057 | LHK_01968 | FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | Cyanophycin synthetase. | 0.705 |
ftsW | LHK_01970 | LHK_03057 | LHK_01970 | FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | ATP-grasp enzyme-like D-alanine-D-alanine ligase; Belongs to the MurCDEF family. | 0.705 |
ftsW | pbpG | LHK_03057 | LHK_02726 | FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | PbpG; D-alanyl-D-alanine-endopeptidase; Belongs to the peptidase S11 family. | 0.549 |
pbpG | LHK_01968 | LHK_02726 | LHK_01968 | PbpG; D-alanyl-D-alanine-endopeptidase; Belongs to the peptidase S11 family. | Cyanophycin synthetase. | 0.543 |
pbpG | LHK_01970 | LHK_02726 | LHK_01970 | PbpG; D-alanyl-D-alanine-endopeptidase; Belongs to the peptidase S11 family. | ATP-grasp enzyme-like D-alanine-D-alanine ligase; Belongs to the MurCDEF family. | 0.543 |
pbpG | LHK_02725 | LHK_02726 | LHK_02725 | PbpG; D-alanyl-D-alanine-endopeptidase; Belongs to the peptidase S11 family. | Heme oxygenase. | 0.483 |
pbpG | ftsW | LHK_02726 | LHK_03057 | PbpG; D-alanyl-D-alanine-endopeptidase; Belongs to the peptidase S11 family. | FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.549 |