STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_02767UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (337 aa)    
Predicted Functional Partners:
galU
GalU; UTP-glucose-1-phosphate uridylyltransferase.
  
 0.968
LHK_00749
Probable histidinol-phosphatase.
    
 0.910
LHK_00823
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.639
LHK_02997
DTDPglucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
0.606
ribB
ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
 
 0.584
LHK_00834
Chain length determinant protein.
 
   
 0.580
flaG
FlaG; Uncharacterized flagellar protein FlaG.
    
   0.568
LHK_01015
Sensor protein.
   
 
 0.538
LHK_01968
Cyanophycin synthetase.
  
  
 0.517
LHK_01970
ATP-grasp enzyme-like D-alanine-D-alanine ligase; Belongs to the MurCDEF family.
  
  
 0.517
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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