STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
goaGGoaG; 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (427 aa)    
Predicted Functional Partners:
gabD
GabD; Succinate-semialdehyde dehydrogenase [NAD(P)]; Belongs to the aldehyde dehydrogenase family.
 
 0.986
mmsA1
MmsA1; Methylmalonate-semialdehyde dehydrogenase.
 
 0.944
LHK_00670
Probable aldehyde dehydrogenase.
 
 0.942
panD
PanD; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.913
panC
PanC; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.903
LHK_03077
Glycine amidinotransferase.
  
 
 0.812
ordL
OrdL; FAD dependent oxidoreductase.
 
  
 0.688
LHK_02212
Probable transcriptional regulator.
 
   
 0.635
speB
SpeB; Agmatinase; Belongs to the arginase family.
 
  
 0.584
LHK_02213
Probable aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.568
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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