Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_02853 | dcd | LHK_02853 | LHK_02852 | Hypothetical protein. | Dcd; Catalyzes the deamination of dCTP to dUTP. | 0.578 |
LHK_02853 | dgt | LHK_02853 | LHK_02854 | Hypothetical protein. | DGTPase. | 0.773 |
LHK_02996 | dcd | LHK_02996 | LHK_02852 | DTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. | Dcd; Catalyzes the deamination of dCTP to dUTP. | 0.584 |
dcd | LHK_02853 | LHK_02852 | LHK_02853 | Dcd; Catalyzes the deamination of dCTP to dUTP. | Hypothetical protein. | 0.578 |
dcd | LHK_02996 | LHK_02852 | LHK_02996 | Dcd; Catalyzes the deamination of dCTP to dUTP. | DTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. | 0.584 |
dcd | dgt | LHK_02852 | LHK_02854 | Dcd; Catalyzes the deamination of dCTP to dUTP. | DGTPase. | 0.611 |
dcd | dut | LHK_02852 | LHK_01910 | Dcd; Catalyzes the deamination of dCTP to dUTP. | Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.929 |
dcd | kthY | LHK_02852 | LHK_02697 | Dcd; Catalyzes the deamination of dCTP to dUTP. | KthY; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.498 |
dcd | murA | LHK_02852 | LHK_02549 | Dcd; Catalyzes the deamination of dCTP to dUTP. | MurA; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.778 |
dcd | ndk | LHK_02852 | LHK_00682 | Dcd; Catalyzes the deamination of dCTP to dUTP. | Ndk; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.921 |
dcd | nrdD | LHK_02852 | LHK_02258 | Dcd; Catalyzes the deamination of dCTP to dUTP. | NrdD; Anaerobic ribonucleoside-triphosphate reductase. | 0.904 |
dcd | pyrG | LHK_02852 | LHK_00545 | Dcd; Catalyzes the deamination of dCTP to dUTP. | PyrG; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.923 |
dcd | smpA | LHK_02852 | LHK_01430 | Dcd; Catalyzes the deamination of dCTP to dUTP. | SmpA/OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.527 |
dgt | LHK_02853 | LHK_02854 | LHK_02853 | DGTPase. | Hypothetical protein. | 0.773 |
dgt | dcd | LHK_02854 | LHK_02852 | DGTPase. | Dcd; Catalyzes the deamination of dCTP to dUTP. | 0.611 |
dgt | ndk | LHK_02854 | LHK_00682 | DGTPase. | Ndk; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.901 |
dgt | nrdD | LHK_02854 | LHK_02258 | DGTPase. | NrdD; Anaerobic ribonucleoside-triphosphate reductase. | 0.900 |
dut | dcd | LHK_01910 | LHK_02852 | Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | Dcd; Catalyzes the deamination of dCTP to dUTP. | 0.929 |
dut | kthY | LHK_01910 | LHK_02697 | Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | KthY; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.954 |
dut | ndk | LHK_01910 | LHK_00682 | Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | Ndk; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.942 |
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