Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHK_00447 | LHK_00917 | LHK_00447 | LHK_00917 | Probable nitrate ABC transporter ATP-binding protein. | Auxiliary mobilization protein C. | 0.417 |
LHK_00447 | LHK_01183 | LHK_00447 | LHK_01183 | Probable nitrate ABC transporter ATP-binding protein. | Binding-protein-dependent transport systems inner membrane component. | 0.937 |
LHK_00447 | LHK_02897 | LHK_00447 | LHK_02897 | Probable nitrate ABC transporter ATP-binding protein. | Putative aliphatic sulfonates binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. | 0.629 |
LHK_00917 | LHK_00447 | LHK_00917 | LHK_00447 | Auxiliary mobilization protein C. | Probable nitrate ABC transporter ATP-binding protein. | 0.417 |
LHK_00917 | LHK_01183 | LHK_00917 | LHK_01183 | Auxiliary mobilization protein C. | Binding-protein-dependent transport systems inner membrane component. | 0.566 |
LHK_00917 | LHK_01184 | LHK_00917 | LHK_01184 | Auxiliary mobilization protein C. | ABC transporter related. | 0.417 |
LHK_00917 | LHK_02897 | LHK_00917 | LHK_02897 | Auxiliary mobilization protein C. | Putative aliphatic sulfonates binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. | 0.487 |
LHK_01183 | LHK_00447 | LHK_01183 | LHK_00447 | Binding-protein-dependent transport systems inner membrane component. | Probable nitrate ABC transporter ATP-binding protein. | 0.937 |
LHK_01183 | LHK_00917 | LHK_01183 | LHK_00917 | Binding-protein-dependent transport systems inner membrane component. | Auxiliary mobilization protein C. | 0.566 |
LHK_01183 | LHK_01184 | LHK_01183 | LHK_01184 | Binding-protein-dependent transport systems inner membrane component. | ABC transporter related. | 0.993 |
LHK_01183 | LHK_02897 | LHK_01183 | LHK_02897 | Binding-protein-dependent transport systems inner membrane component. | Putative aliphatic sulfonates binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. | 0.762 |
LHK_01184 | LHK_00917 | LHK_01184 | LHK_00917 | ABC transporter related. | Auxiliary mobilization protein C. | 0.417 |
LHK_01184 | LHK_01183 | LHK_01184 | LHK_01183 | ABC transporter related. | Binding-protein-dependent transport systems inner membrane component. | 0.993 |
LHK_01184 | LHK_02897 | LHK_01184 | LHK_02897 | ABC transporter related. | Putative aliphatic sulfonates binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. | 0.691 |
LHK_02896 | LHK_02897 | LHK_02896 | LHK_02897 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Putative aliphatic sulfonates binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. | 0.774 |
LHK_02896 | folP | LHK_02896 | LHK_02899 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | FolP; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. | 0.417 |
LHK_02896 | glmM | LHK_02896 | LHK_02898 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | GlmM; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.505 |
LHK_02896 | hemB | LHK_02896 | LHK_02895 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | HemB; Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.539 |
LHK_02897 | LHK_00447 | LHK_02897 | LHK_00447 | Putative aliphatic sulfonates binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. | Probable nitrate ABC transporter ATP-binding protein. | 0.629 |
LHK_02897 | LHK_00917 | LHK_02897 | LHK_00917 | Putative aliphatic sulfonates binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. | Auxiliary mobilization protein C. | 0.487 |
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