STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_02937Mg chelatase-related protein; K07391 magnesium chelatase family protein. (501 aa)    
Predicted Functional Partners:
LHK_03146
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 0.924
comF
ComF; Competence protein F.
 
  
 0.855
LHK_03023
UPF0102 domain containing protein; Belongs to the UPF0102 family.
 
  
 0.748
def
Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
     0.731
LHK_00644
ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2; Competence protein.
 
  
 0.655
LHK_02936
DUF526 domain containing protein.
       0.649
LHK_00822
Putative PAS/PAC sensor protein.
  
  
 0.608
LHK_02938
Sporulation related.
       0.598
ruvC
RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.536
dsbA
DsbA; Thiol:disulfide interchange protein dsbA.
       0.519
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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