STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_02982Metal dependent phosphohydrolase. (424 aa)    
Predicted Functional Partners:
LHK_01098
Diguanylate cyclase.
   0.938
LHK_00705
Sensor protein.
 
 0.855
LHK_00711
GGDEF domain protein.
 
 0.810
LHK_02652
Diguanylate cyclase.
   0.792
LHK_03199
GGDEF domain protein.
   0.763
LHK_00815
Diguanylate cyclase/phosphodiesterase domain 2.
 
 0.724
polA
PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.670
LHK_00948
GGDEF domain protein.
 
   0.656
LHK_00549
GGDEF domain protein.
   0.618
LHK_00860
GGDEF family protein.
 
   
 0.598
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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