STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_03168DNA-binding response regulator; Hik39, cheA. (221 aa)    
Predicted Functional Partners:
LHK_00822
Putative PAS/PAC sensor protein.
 
 
 0.973
LHK_01015
Sensor protein.
 
 
 0.847
fliF1
FliF1; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.780
fliN
FliN; Flagellar motor switch protein.
   
    0.770
LHK_00129
Sensory box/GGDEF family protein.
  
 
 0.702
LHK_00673
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.702
LHK_02365
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.702
LHK_03167
Che; Response regulator receiver protein; similar to RS05112.
 
 
0.678
LHK_00711
GGDEF domain protein.
  
 
 0.656
LHK_00815
Diguanylate cyclase/phosphodiesterase domain 2.
  
 
 0.656
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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