STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_03195Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family. (247 aa)    
Predicted Functional Partners:
der
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.701
LHK_00090
Probable ribonuclease II.
 
 
   0.634
LHK_02203
Probable tRNA methyltransferase.
 
 
 
 0.608
kcy
Kcy; Cytidylate kinase.
  
  
 0.556
LHK_03196
Serine phosphatase RsbU, regulator of sigma subunit.
       0.539
LHK_03197
Hypothetical protein.
       0.535
xthA
XthA; Exodeoxyribonuclease III.
  
    0.529
exoA
ExoA; Exodeoxyribonuclease III.
  
    0.529
LHK_00577
Probable transmembrane protein.
  
     0.518
LHK_03198
DUF1987 domain containing protein.
       0.512
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.