STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_03249Ammonium transporter. (402 aa)    
Predicted Functional Partners:
glnB
GlnB; Nitrogen regulatory protein P-II-1; Belongs to the P(II) protein family.
 
 0.989
glnK
GlnK; Nitrogen regulatory protein P-II-2; Belongs to the P(II) protein family.
 
 0.987
LHK_01030
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
      0.772
gltB
GltB; Glutamate synthase, large subunit.
 
  
 0.761
mscL
MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
      
 0.694
fadL
FadL; Long-chain fatty acid transport protein.
     
 0.688
LHK_02394
Probable integral membrane protein.
      
 0.687
LHK_02965
MscS family inner membrane protein ynaI.
      
 0.687
aefA
AefA; Transmembrane protein.
      
 0.680
LHK_01942
MscS Mechanosensitive ion channel precursor.
      
 0.680
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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