Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
KMQ59351.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)    
Predicted Functional Partners:
KMQ59447.1
Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.909
KMQ58348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.727
KMQ59352.1
Antitermination protein NusB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.667
KMQ64614.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.646
KMQ59350.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.640
KMQ64607.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.621
KMQ59353.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
KMQ59354.1
Preprotein translocase subunit YajC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.617
KMQ64502.1
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.525
KMQ63128.1
Side tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.525
Your Current Organism:
Chryseobacterium angstadtii
NCBI taxonomy Id: 558151
Other names: ATCC BAA-2160, C. angstadtii, Chryseobacterium angstadtii Kirk et al. 2013, Chryseobacterium sp. KM, KCTC 23297, NRRL B-59516, strain KM
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