Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CadAMetal ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (652 aa)    
Predicted Functional Partners:
IQ37_00105
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
 
   
 0.808
IQ37_06735
ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.736
IQ37_00110
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.698
IQ37_00765
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.672
IQ37_15405
Multicopper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.671
IQ37_00095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.555
IQ37_00115
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
IQ37_00090
ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.480
RibD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.455
IQ37_15400
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.427
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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